Hanlon Publications
ARTICLES IN PEER-REVIEWED JOURNALS:
2023:
Cai, L., McGuire, N.E., Hanlon, R.T., Mooney, T.A., Girdhar, Y. Semi-supervised visual tracking of marine animals using Autonomous Underwater Vehicles. 2023. International Journal of Computer Vision 131 (6): 1406-1427.
Moniz, H.A., Kruleski, S.M., Risbud, A.D., Louden, S.J.H., Hanlon, R.T., Stokes, A.N., Palmer, S.E., Feldman, C.R. 2023. Aposematic coloration of Pacific newts (Tracha) provides a qualitatively but not quantitatively honest signal to predators. Biol J Linnean Soc. 139 (1): 1-17.
Jones, I.T., Schumm, M., Stanley, J.A., Hanlon, R.T., and Mooney, T.A. 2023. Longfin squid reproductive behaviours and spawning withstand wind farm pile driving noise. ICES Journal of Marine Sciences 80, fsad117.
2022:
Kim, D., Buresch, K.C., Hanlon, R.T. and Kampff, A.R. 2022. An experimental method for evoking and characterizing dynamic color patterning of cuttlefish during prey capture. Journal of Biological Methods 9 (2): e161
Buresch, K.C., Sklar, K., Chen, J.Y., Madden, S.R., Mongil, A.S., Wise, G.V., Boal, J.G., Hanlon, R.T. 2022. Contact chemoreception in multi-modal sensing of prey by Octopus. J. Comparative Physiology A 208 (3): 435-442.
Drinkwater E., Allen, W.L., Endler, J.A., Hanlon, R.T. et al (21 authors). 2022. A synthesis of deimatic behaviour. Biological Reviews 97 (6): 2237-2267.
Barrett, C.J. …… Hanlon, R.T. …. Yen, D.T.H. (32 authors). 2022. Cuttlefish conservation: a global view of methods to ameliorate unwanted fishing mortality and other anthropogenic threats to sustainability. ICES Journal of Marine Science 79 (10): 2579-2596.
2021:
Senft, S.L., Kuzirian, A.M. and Hanlon, R.T. 2021. Networks of linked radial muscles could influence dynamic skin patterning of squid chromatophores. Journal of Morphology 282(1): 1245-1258.
Abbo, L.A., Himebaugh, N.E., Demelo, L.M., Hanlon, R.T., Crook, R.J. 2021. Anesthetic efficacy of magnesium chloride and ethyl alcohol in temperate octopus and cuttlefish species. J. American Association for Laboratory Animal Science 60 (5): 556-567.
Bennice, CO, Brooks, WR and Hanlon RT. 2021. Behavioral dynamics provide insight into resource exploitation and habitat coexistence of two octopus species in a shallow Florida lagoon. Journal of Experimental Marine Biology and Ecology. 542-543: 151592
Schnell, A.K., Clayton, N.S., Hanlon, R.T., Jozet-Alves, C. 2021. Episodic-like memory is preserved with age in cuttlefish. Proc. Roy. Soc. B. 288: 20211052.
2020:
Hanlon, R.T., and McManus, G. 2020. Flamboyant cuttlefish behavior: camouflage tactics and complex colorful reproductive behavior assessed during field studies at Lembeh Strait, Indonesia. J. Experimental Marine Biology and Ecology 529: 151397. DOI:
Kennedy, E.B.L., Buresch, K.C., Boinapally, P., and Hanlon R.T. (2020). Octopus arms exhibit exceptional flexibility. Sci Rep 10:20872.
2019:
Marian, J.E.A.R., Apostólico, L.H., Chiao, C.C., Hanlon, R.T., Hirohashi, N., Iwata, Y., Mather, J.A., Sato, N., Shaw, P.W. (2019). Male alternative reproductive tactics and associated evolution of anatomical characteristics in Loliginid squid. Frontiers in Physiology, 10(1281). DOI:
Bennice, C.O., Rayburn, A.P., Brooks, W.R. and Hanlon, R.T. (2019). Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. Marine Ecology Progress Series 609: 151-161. DOI:
Iglesias, T.L., Boal, J.G., Frank, M.G., Zeil, J. and Hanlon, R.T. (2019). Cyclic nature of the REM-like state in the cuttlefish Sepia officinalis. Journal of Experimental Biology 222. DOI:
Williams, T.L., Senft, S.L., Yeo, J., Martin-Martinez, F.J., Kuzirian, A.M., Martin, C.A., DiBona, C.W., Chen, C.-T., Dineen, S.R., Nguyen, H.T., Gomes, C.M., Rosenthal, J.J.C., MacManes, M.D., Chu, F., Buehler, M.J., Hanlon, R.T., Deravi, L.F. (2019). Dynamic pigmentary and structural coloration within a cephalopod chromatophore organs. Nature Communications 10: 1004. DOI:
Schnell, A.K., Jozet-Alves, C., Hall, K.C., Radday, L. and Hanlon, R.T. (2019). Fighting and mating success in giant Australian cuttlefish is influenced by behavioural lateralization. Proceedings of the Royal Society B 286(1898):20182507. DOI:
Lutz, H., Ramirez-Puebla, T., Abbo, L., Durand, A., Schlundt, C., Gottel, N., Sjaarda, A., Hanlon, R.T., Gilbert, J.A., and J.L. Mark Welch. (2019). A simple microbiome in the European common cuttlefish, Sepia officinalis. mSystems DOI:
2018:
Gonzalez-Bellido, P.T., Scaros, A.T., Hanlon, R.T. and Wardill, T.J. (2018). Neural control of dynamic 3-dimensional skin papillae for cuttlefish camouflage. iScience 1: 24-34. DOI:
Hanlon, R.T., Mäthger, L.M., Bell, G.R.R., Kuzirian, A.M & Senft, S.L. (2018). White reflection from cuttlefish skin leucophores. Bioinspiration and Biomimetics 13: 035002. DOI:
Chubb, C., Chiao, C.-C., Ulmer, K.M., Buresch, K.C., Birk, M. and Hanlon, R.T. (2018). Dark scene elements strongly influence cuttlefish camouflage responses in visually cluttered environments. Vision Research 149: 86-101. DOI:
2017:
Pikul, J.H., Li, S., Bai, H., Hanlon, R.T., Cohen, I. and Shepherd, R.F. (2017). Stretchable surfaces with programmable 3-D texture morphing for synthetic camouflaging skins. Science 358: 210-214. DOI:
Panetta, D., Buresch, K.C., & Hanlon, R.T. (2017). Dynamic masquerade with morphing 3D skin in cuttlefish. Biology Letters 13 (3): 20170070 (featured in Nature Vol 544 Research Highlights). DOI:
Allen, J.J., Akkaynak, D., Schnell, A.K. & Hanlon, R.T. (2017). Dramatic fighting by male cuttlefish for a female mate. American Naturalist 190 (1): 144-151. DOI:
Panetta, D., Solomon, M., Buresch, K.C. & Hanlon, R.T. (2017). Small-scale rearing of cuttlefish (Sepia officinalis) for research purposes. Marine & Freshwater Behaviour and Physiology 50(2): 115-124. DOI:
2016:
Schnell, A.K., Smith, K-L., Hanlon, R.T., Hall, K.C. & Harcourt, R.T. (2016). Cuttlefish perform multiple agonistic displays to communicate a hierarchy of threats. Behav Ecol & Sociobiology 70 (10): 1643-1655. DOI:
Schnell, A.K., Hanlon, R.T., Benkada, A., & Jozet-Alves, C. (2016). Lateralization of eye use in cuttlefish: opposite direction for anti-predatory and predatory behavior. Frontiers in Physiology 7: Article 620. DOI:
Oshima, M., di Pauli von Treuheim, T., Carroll, J., Hanlon, R.T., Walters, E.T., & Crook, R.J. (2016). Peripheral injury alters schooling behavior in squid, Doryteuthis pealeii. Behav Processes, 128: 89-95. DOI:
2015:
Chiao, C.C., Chubb, C., & Hanlon, R.T. (2015). A review of visual perception mechanisms that regulate rapid adaptive camouflage in cuttlefish. Journal of Comparative Physiology A-Sensory Neural and Behavioral Physiology, 201(9): 933–945. DOI:
Buresch, K.C., Ulmer, K.M., Akkaynak, D., Allen, J.J., Mäthger, L.M., Nakamura, M., & Hanlon, R.T. (2015). Cuttlefish adjust body pattern intensity with respect to substrate intensity to aid camouflage, but do not camouflage in extremely low light. Journal of Experimental Marine Biology and Ecology, 462: 121–126. DOI:
Tyrie, E.K., Hanlon, R.T., Siemann, L.A., & Uyarra, M.C. (2015). Coral reef flounders, Bothus lunatus, choose substrates on which they can achieve camouflage with their limited body pattern repertoire. Biological Journal of the Linnean Society, 114(3): 629–638. DOI:
Schnell, A.K., Smith, C.L., Hanlon, R.T., & Harcourt, R.T. (2015). Female receptivity, mating history, and familiarity influence the mating behavior of cuttlefish. Behavioral Ecology and Sociobiology, 69(2): 283–292. DOI:
Kingston, A.C.N., Kuzirian, A.M., Hanlon, R.T., & Cronin, T.W. (2015). Visual phototransduction components in cephalopod chromatophores suggest dermal photoreception. Journal of Experimental Biology, 218(10): 1596–1602. DOI:
Kingston, A.C., Wardill, T.J., Hanlon, R.T., & Cronin, T.W. (2015). An Unexpected Diversity of Photoreceptor Classes in the Longfin Squid, Doryteuthis pealeii. PLoS One, 10(9): e0135381. DOI:
Buresch, K.C., Ulmer, K.M., Cramer, C., McAnulty, S., Davison, W., Mäthger, L.M., & Hanlon, R.T. (2015). Tactical Decisions for Changeable Cuttlefish Camouflage: Visual Cues for Choosing Masquerade Are Relevant from a Greater Distance than Visual Cues Used for Background Matching. Biological Bulletin, 229(2): 160–166. DOI:
Allen, J.J., Akkaynak, D., Sugden, A.U., & Hanlon, R.T. (2015). Adaptive body patterning, three-dimensional skin morphology and camouflage measures of the slender filefish Monacanthus tuckeri on a Caribbean coral reef. Biological Journal of the Linnean Society, 116(2): 377–396. DOI:
Kripke, E., Senft, S.L., Mozzherin, D., & Hanlon, R.T. (2015). Visualizing Biological Complexity in Cephalopod Skin: A Synergy of Art and Science Technologies. Leonardo, 48(5): 486–487. DOI:
Schnell, A.K., Smith, C.L., Hanlon, R.T., & Harcourt, R.T. (2015). Giant Australian cuttlefish use mutual assessment to resolve male-male contests. Animal Behaviour, 107: 31–40. DOI:
2014:
Samson, J.E., Mooney, T.A., Gussekloo, S.W.S., & Hanlon, R.T. (2014). Graded behavioral responses and habituation to sound in the common cuttlefish Sepia officinalis. Journal of Experimental Biology, 217(24): 4347–4355. DOI:
Yu, C., Li, Y., Zhang, X., Huang, X., Malyarchuk, V., Wang, S., Shi, Y., Gao, L., Su, Y., Zhang, Y., Xu, H., Hanlon, R.T., and Rogers, J. (2014). Adaptive optoelectronic camouflage systems with designs inspired by cephalopod skins. Proceedings of the National Academy of Sciences, 111 (36): 12998-13003. DOI:
Watson, A.C., Siemann, L.A., & Hanlon, R.T. (2014). Dynamic camouflage by Nassau groupers Epinephelus striatus on a Caribbean coral reef. Journal of Fish Biology, 85(5): 1634 – 1649. DOI:
Allen, J.J., Bell, G.R.R., Kuzirian, A.M., Velankar, S.S., & Hanlon, R.T. (2014). Comparative Morphology of Changeable Skin Papillae in Octopus and Cuttlefish. Journal of Morphology, 275(4): 371–390. DOI:
Deravi, L.F., Magyar, A.P., Sheehy, S.P., Bell, G.R.R., Mäthger, L.M., Senft, S.L., Wardill, T.J., Lane, W.S., Kuzirian, A.M., Hanlon, R.T., Hu, E.L. and Parker, K.K. (2014). The structure-function relationship of a natural nanoscale photonic device in cuttlefish chromatophores. J Royal Society Interface, 11(93): 20130942. DOI:
Akkaynak, D., Treibitz, T., Xiao, B., Gurkan, U.A., Allen, J.J., Demirci, U. and Hanlon, R.T. (2014). Use of commercial off-the-shelf digital cameras for scientific data acquisition and scene-specific color calibration. Journal of the Optical Society of America 31(2): 312-321. DOI:
Gonzalez-Bellido, P.T.*, Wardill, T.J.*, Ulmer, K.M., Buresch, K.C., Hanlon, R.T. (2014). Expression of squid iridescence depends on environmental luminance and peripheral ganglion control. J. Experimental Biology 217: 850-858. DOI:
Crook, R.J., Dickson, K., Hanlon, R.T., & Walters, E.T. (2014). Nociceptive Sensitization Reduces Predation Risk. Current Biology, 24(10): 1121–1125. DOI:
Bell, G.R.R., Mäthger, L.M., Gao, M., Senft, S.L., Kuzirian, A.M., Kattawar, G.W., & Hanlon, R.T. (2014). Diffuse white structural coloration from multilayer reflectors in a squid. Advanced Materials, 26(25): 4352–4356. DOI:
2013
Allen, J.J., Bell, G.R.R., Kuzirian, A.M., Hanlon, R.T. (2013). Cuttlefish skin papilla morphology suggests a muscular hydrostat function for rapid changeability. J Morphology 274 (6): 645-656. DOI:
Allen, J.J., Bell, G.R.R., Kuzirian, A.M, Velankar, S.S. and Hanlon, R.T. (2013). Comparative morphology of changeable skin papillae in octopus and cuttlefish. J. Morphology 275(4): 371-390. DOI:
Akkaynak, D., Allen, J.J., Mäthger, L.M., Chiao, C.-C., Hanlon, R.T. (2013). Quantification of cuttlefish (Sepia officinalis) camouflage in the eyes of fish predators: A study of color and luminance using in situ spectrometry. J. Comp. Physiol A. 199 (3): 211-225. DOI:
Hanlon, R.T., Chiao, C.-C., Mäthger, L.M., Marshall, N.J. (2013). A fish-eye view of cuttlefish camouflage using in-situ spectrometry. Biological Journal of the Linnean Society 109 (3): 535-551. DOI:
Bell, G.R.R., Kuzirian, A.M., Senft, S.L., Mäthger, L.M., Wardill, T.J., Hanlon, R.T. (2013). Chromatophore radial muscle fibers anchor in flexible squid skin. Invertebrate Biology 132: 120-132. DOI:
Chiao, C.C., Ulmer, K.M., Siemann, L.A., Buresch, K.C., Chubb, C., Hanlon, R.T. (2013). How visual edge features influence cuttlefish camouflage patterning. Vision Research 83: 40-47. DOI:
Crook, R.J., Hanlon, R.T. and Walters, E.T. (2013). Squid have nociceptors that display widespread long-term sensitization and spontaneous activity after bodily injury. J. Neuroscience 33 (24): 10021-10026. DOI:
Kreit, E., Mäthger, L.M., Hanlon, R.T., Dennis, P.B., Naik, R.R., Forsythe, E. and Heikenfeld, J. (2013). Biological vs. electronic adaptive coloration: how can one inform the other? Journal of the Royal Society Interface 10 (78): article 20120601 DOI:
Wardill, T.J., Gonzalez-Bellido, P.T., Crook, R.J. and Hanlon, R.T. (2013). Neural control of tuneable skin iridescence in squid. Proc. R. Soc. B. 279: 4243-4252. DOI:
Mäthger, L.M., Hanlon, R.T., Håkansson, J., Nilsson, D.-E. (2013). The W-shaped pupil in cuttlefish (Sepia officinalis): functions for improving horizontal vision. Vision Research 83: 19–24. DOI:
Mäthger, L.M., Senft, S.L., Gao, M., Karaveli, S., Bell, G.R.R., Zia, R., Kuzirian, A.M., Dennis, P.B., Crookes-Goodson, W.J., Naik, R.R., Kattawar, G.W., Hanlon, R.T. (2013). Bright white scattering from protein spheres in color changing, flexible cuttlefish skin. Advanced Functional Materials 23(32): 3980-3989. DOI:
Nilsson, D.-E., Warrant, E.J., Johnsen, S., Hanlon, R.T., and Shashar, N. (2013). The giant eyes of giant squid are indeed unexpectedly large, but not if used for spotting sperm whales. BMC Evolutionary Biology 13: article 187. DOI:
Shashar, N. and Hanlon, R.T. (2013). Spawning behavior dynamics at communal egg beds in the squid Doryteuthis (Loligo) pealeii (Mollusca: Cephalopoda). J. Experimental Marine Biology and Ecology 447:65-74. DOI:
Staudinger, M.D., Buresch, K.C., Mäthger, L.M., Fry, C., McAnulty, S., Ulmer, K.M., Hanlon, R.T. (2013). Defensive responses of cuttlefish to different teleost predators. Biological Bulletin 225 (3): 161-174. DOI:
Ulmer, K.M., Buresch, K.C., Kossodo, M.M., Mäthger, L.M., Siemann, L.A., Hanlon, R.T. (2013). Visual background features in the vertical dimension have a strong influence on cuttlefish camouflage. Biological Bulletin 224(2): 110-118. DOI:
2012
Wardill, T.J., Gonzalez-Bellido, P.T., Crook, R.J., Hanlon, R.T. (2012). Neural control of tuneable skin iridescence in squid. Proc. R. Soc. B. 279: 4243-52. DOI:
Albertin, C.B., Bonnaud, L., Brown, T.C., Crookes-Goodsen, W.J., da Fonseca, R.R., Di Cristo, C., Dilkes, B.P., Edsinger-Gonzales, E., Freeman, R.M., Hanlon, R.T., & 16 others. (2012). Cephalopod genomics: a plan of strategies and organization. Standards in Genomic Sciences 7: 175-188. DOI:
Mäthger, L.M. and Hanlon, R.T. (2012). Pigmentation or transparency? Camouflage tactics in deep-sea cephalopods. Pigment Cell and Melanoma Research 25 (3): 295-296. DOI:
Gerlach, G., Buresch, K.C. and Hanlon, R.T. (2012). Population structure of the squid Doryteuthis (Loligo) pealeii on the eastern coast of the USA: comment on Shaw et al. (2010). Marine Ecology Progress Series 450: 281-283. DOI:
Mäthger, L.M., Bell, G.R.R., Kuzirian, A.M., Allen, J.J. and Hanlon, R.T. (2012). How does the blue-ringed octopus (Hapalochlaena lunulata) flash its blue rings? Journal of Experimental Biology. 215, 3752-3757. DOI:
Nilsson, D.-E., Warrant, E.J., Hanlon, R.T., Shashar, N., and Johnsen, S. (2012). A unique advantage for giant eyes in giant squid. Current Biology 22 (8): 683-688. DOI:
Barbosa, A., Allen, J.J., Mäthger, L.M. and Hanlon, R.T. (2012). Cuttlefish use visual cues to determine arm postures for camouflage. Proc Roy Soc B 279:84-90. DOI:
2011
Buresch, K.C., Mäthger, L.M, Allen, J.J., Bennice, C., Smith, N., Schram, J., Chiao, C-C., & Hanlon, R.T. (2011). The use of background matching vs. masquerade for camouflage in cuttlefish Sepia officinalis. Vision Research 51:2362-8. DOI:
Chiao, C-C., Wickiser, J.K., Allen, J.J., Genter, B., & Hanlon, R.T. (2011). Hyperspectral imaging of cuttlefish camouflage indicates good color match in the eyes of fish predators. Proceedings of the National Academy of Sciences 108 (22): 9148-9153. DOI:
Cummings, S.F., Boal, J.G., Buresch, K.C., Kuanpradit, C., Sobhon, P., Degnan, B.M., Nagle, G.T., & Hanlon, R.T. (2011). Extreme aggression in male squid induced by a β -MSP-like pheromone. Current Biology 21: 322-327. DOI:
Shashar, N., Johnsen, S., Lerner, A., Sabbah, S., Chiao, C-C., Mäthger, L.M., & Hanlon, R.T. (2011). Underwater linear polarization – physical limitations to biological functions. Phil. Trans. Royal Society B 366: 649-654. DOI:
Staudinger, M.D., Hanlon, R.T., & Juanes, F. (2011). Primary and secondary defenses of squid to cruising and ambush fish predators: variable tactics and their survival value. Animal Behaviour 81(3): 585-594. DOI:
Zylinski, S., How, M.J., Osorio, D., Hanlon, R.T., & Marshall, N.J. (2011). To be seen or to hide: visual characteristics of body patterns for camouflage and communication in the Australian giant cuttlefish, Sepia apama. American Naturalist 177 (5): 681-690.DOI:
Young, M.A., Kvitek, R.G., Iampietro, P.J., Garza, C.D., Malliet, R., & Hanlon, R.T. (2011). Seafloor mapping and landscape ecology analyses used to monitor variations in spawning site preference and benthic egg mop abundance for the California market squid (Doryteuthis opalescens). J Exp Marine Biology & Ecology 407: 226-233. DOI:
Crook, R.J., Lewis, T., Hanlon, R.T.